PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G04710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 125aa    MW: 14286.8 Da    PI: 10.0469
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G04710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like21.26.6e-071193351
          G2-like 33 lelmkvkgLtlehvkSHLQ 51
                     +++m+v gLt +++kSHLQ
  OPUNC01G04710.1  1 MQAMGVTGLTTHNIKSHLQ 19
                     799**************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-5119IPR009057Homeodomain-like
PRINTSPR006865.8E-24826IPR000814TATA-box binding protein
Gene3DG3DSA:3.30.310.102.4E-92051IPR012295Beta2-adaptin/TBP, C-terminal domain
SuperFamilySSF559451.07E-62054No hitNo description
SuperFamilySSF559454.87E-1846105No hitNo description
Gene3DG3DSA:3.30.310.103.6E-2252105IPR012295Beta2-adaptin/TBP, C-terminal domain
PfamPF003528.5E-2052105IPR000814TATA-box binding protein
PRINTSPR006865.8E-245571IPR000814TATA-box binding protein
PRINTSPR006865.8E-247994IPR000814TATA-box binding protein
PRINTSPR006865.8E-2498114IPR000814TATA-box binding protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MQAMGVTGLT THNIKSHLQV CTGAKSEQQS KLAARKYARI IQKLGYPAKF KDFKIQNIVG  60
SCDVKFPIRL EGLAYSHGAF SSYEPELFPG VIYRMKQPKI VLLIFCFRQD CFDRSKNMFQ  120
EVTRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qn7_B2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn8_A2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn8_B2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn9_A2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn9_B2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qna_A2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qna_B2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnb_A2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnb_B2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnc_A2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnc_B2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qne_A2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1qne_B2e-522010680166TRANSCRIPTION INITIATION FACTOR TFIID-1
1vok_A2e-522010680166TATA-BOX-BINDING PROTEIN
1vok_B2e-522010680166TATA-BOX-BINDING PROTEIN
1vol_B2e-522010680166PROTEIN (TATA BINDING PROTEIN (TBP))
1vtl_E1e-522010668154TATA BINDING PROTEIN (TBP)
1vtl_F1e-522010668154TATA BINDING PROTEIN (TBP)
1vto_A2e-522010670156TATA BINDING PROTEIN
1vto_B2e-522010670156TATA BINDING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0611031e-147AK061103.1 Oryza sativa Japonica Group cDNA clone:006-207-B06, full insert sequence.
GenBankCT8302261e-147CT830226.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103A15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617946.12e-57PREDICTED: TATA-box-binding protein-like isoform X3
SwissprotP485117e-58TBP_MESCR; TATA-box-binding protein
SwissprotP501587e-58TBP1_MAIZE; TATA-box-binding protein 1
SwissprotP501597e-58TBP2_MAIZE; TATA-box-binding protein 2
SwissprotQ428087e-58TBP_SOYBN; TATA-box-binding protein
SwissprotQ8W0W47e-58TBP2_ORYSJ; TATA-binding protein 2
TrEMBLA0A0E0JER92e-90A0A0E0JER9_ORYPU; Uncharacterized protein
STRINGBRADI1G13220.19e-56(Brachypodium distachyon)
STRINGGLYMA09G41330.11e-55(Glycine max)
STRINGGLYMA18G44460.19e-56(Glycine max)
STRINGOB03G33300.11e-55(Oryza brachyantha)
STRINGSi023295m1e-55(Setaria italica)